People

PROFESSORS

DOC. ING. JIŘÍ KLÉMA, PH.D.

doc. Ing. Jiří Kléma, Ph.D.
Praha 2, Karlovo náměstí 13, E-432
+420 224 357 608
klema@fel.cvut.cz

Theses topics
Machine Learning: Time series prediction, Learning from text data, Data Mining, Unsupervised Learning, Machine Learning
Bioinformatics: Computational Biology, Bioinformatics
About me:

Research in machine learning, data mining and decision support, bioinformatics. See http://ida.felk.cvut.cz/klema/ for further details.

Lišková, P., Dudáková, L., Křepelová, A., Kléma, J., Hysi, P. 2017 Replication of SNP Associations with Keratoconus in a Czech Cohort, detail

Pluskal, O., Kléma, J. 2016 Action Based Feature Extraction from User Logs, detail

Beličková, M., Merkerová, M., Votavová, H., Válka, J., Veselá, J., Pejsová, B., Hájková, H., Kléma, J., Čermák, J., Jonášová, A. 2016 Up-regulation of ribosomal genes is associated with a poor response to azacitidine in myelodysplasia and related neoplasms, detail

Malinka, F., Kléma, J., Železný, F. 2016 Sémantická dvojshluková analýza dat genové exprese, detail

Líbalová, H, Vrbová, K, Brzicová, T., Sikorová, J., Milcová, A., Vojtíšek, M., Beránek, V., Kléma, J., Neča, J., Cigánek, M., Machala, M., Pěnčíková, K., Topinka, J. 2016 Comparative analysis of the toxic responses of organic extracts from diesel/biodiesel engine emissions in human lung BEAS-2B cells, detail

Líbalová, H., Rossner, P., Vrbová, K., Brzicová, T., Sikorová, J., Vojtisek-Lom, M., Beránek, V., Kléma, J., Cigánek, M., Neča, J., Pěnčíková, K., Machala, M., Topinka, J. 2016 Comparative Analysis of Toxic Responses of Organic Extracts from Diesel and Selected Alternative Fuels Engine Emissions in Human Lung BEAS-2B Cells, detail

Libalova, H., Rossner, P., Jr., Vrbova, K., Brzicova, T., Sikorova, J., Vojtíšek, M., Beránek, V., Kléma, J., Ciganek, M., Neca, J., Pencikova, K., Machala, M., Topinka, J. 2016 Comparative Analysis of Toxic Responses of Organic Extracts from Diesel and Selected Alternative Fuels Engine Emissions in Human Lung BEAS-2B Cells, detail

Anděl, M., Strnad, P., Kléma, J. 2016 miXGENE: an Effective Public Tool for Integrative Analysis of High-throuhput Omics Data, detail

Kléma, J., Anděl, M., Votava, O. 2016 Zefektivnění veřejného systému miXGENE pro integrativní analýzu molekulárních dat, detail

Libalova, H., Vrbova, K., Brzicova, T., Sikorova, J., Vojtíšek, M., Beránek, V., Kléma, J. 2016 Comparative analysis of the toxic responses of organic extracts from diesel/biodiesel engine emissions in human lung BEAS-2B cells, detail

Anděl, M., Kléma, J. 2016 Predikce toxicity nanočástic, detail

Kléma, J., Malinka, F., Železný, F. 2016 Semantic Biclustering: A New Way to Analyze and Interpret Gene Expression Data, detail

Krejčík, Z., Beličková, M., Hruštincová, A., Kléma, J., Zemanová, Z., Michalová, K., Čermák, J., Jonášová, A., Merkerová, M.D. 2015 Aberrant expression of miRNA cluster in 14q32 region is associated with del(5q) myelodysplastic syndrome and lenalidomide treatment, detail

Cellier, P., Charnois, T., Plantevit, M., Rigotti, Ch., Crémilleux, B., Gandrillon, O., Kléma, J., Manguin, J. 2015 Sequential Pattern Mining for Discovering Gene Interactions and their Contextual Information from Biomedical Texts, detail

Dostalova Merkerova, M., Krejcik, Z., Belickova, M., Hrustincova, A., Kléma, J., Stara, E., Zemanova, Z., Michalova, K., Cermak, J., Jonasova, A. 2015 Genome-wide miRNA Profiling in Myelodysplastic Syndrome with del(5q) Treated with Lenalidomide, detail

Anděl, M., Kléma, J., Krejčík, Z. 2015 Network-Constrained Forest for Regularized Classification of Omics Data, detail

Kléma, J., Strnad, P., Anděl, M., Holec, M., Gologuzov, V. 2015 miXGENE, detail

Belickova, M., Jonasova, A., Vesela, J., Pejsova, B., Kléma, J. 2015 Patterns of DNA Methylation and Gene Expression in Higher-Risk Myelodysplastic Syndromes: Predictors of Demethylating Therapy Response, detail

Kunc, V., Kléma, J., Anděl, M. 2015 Increasing Weak Classifier Diversity by Omics Networks, detail

Anděl, M., Kléma, J., Masri, F., Krejčík, Z., Beličková, M. 2015 Sparse Omics-network Regularization to Increase Interpretability and Performance of Linear Classification Models, detail

Kléma, J., Zahálka, J., Anděl, M., Krejčík, Z. 2015 Interaction-Based Aggregation of mRNA and miRNA Expression Profiles to Differentiate Myelodysplastic Syndrome, detail

Buryan, P. 2014 Refinement Action-Based Framework for Utilization of Softcomputing in Inductive Learning, detail

Anděl, M., Kléma, J., Krejčík, Z. 2014 Network-Constrained Forest for Regularized Omics Data Classification, detail

Líbalová, H., Krčková, S., Uhlířová, K., Kléma, J., Ciganek, M., Rossener Jr., P., Šrám, R.J., Vondráček, J., Machala, M., Topinka, J. 2014 Analysis of Gene Expression Changes in A549 Cells Induced by Organic Compounds from Respirable Air Particles, detail

Štepanovský, M., Kléma, J., Železný, F. 2014 Analysis of the Relationship Between Process and Vibex Data, detail

Líbalová, H., Krčková, S., Uhlířová, K., Milcová, A., Schmuczerová, J., Cigánek, M., Kléma, J., Machala, M., Šrám, RJ, Topinka, J. 2014 Genotoxicity but not the AhR-mediated activity of PAHs is inhibited by other components of complex mixtures of ambient air pollutants, detail

Holec, M., Gologuzov, V., Kléma, J. 2014 miXGENE tool for learning from heterogeneous gene expression data using prior knowledge, detail

Dudakova, L., Stranecky, V., Kléma, J., Palos, M., Kalasova, S., Jirsova, K., Liskova, P. 2014 Genotyping of Lysyl Oxidase and Hepatocyte Growth Factor in Czech Keratoconic patients, detail

Kléma, J., Zahálka, J., Anděl, M., Krejčík, Z. 2014 Knowledge-based Subtractive Integration of mRNA and miRNA Expression Profiles to Differentiate Myelodysplastic Syndrome, detail

Líbalová, H., Uhlířová, K., Kléma, J., Machala, M., Cigánek, M., Topinka, J., Sram, R.J. 2013 Global Gene Expression Changes Induced by Organic Extracts of Air Pollutants in Human Lung Cells, detail

Krejcik, Z., Merkerova, M., Belickova, M., Mrhalkova, A., Kléma, J. 2013 Microarray-based miRNA expression profiling in patients with myelodysplastic syndrome with deletion of chromosome 5q treated with lenalidomide, detail

Železný, F., Kléma, J. 2013 Využívání znalostí pro získávání znalostí, detail

Anděl, M., Kléma, J., Krejčík, Z. 2013 Integrating mRNA and miRNA Expression with Interaction Knowledge to Differentiate Myelodysplastic Syndrome, detail

Zemanová, M. 2012 Exploiting Ontologies and Higher Order Knowledge in Relational Data Mining, detail

Líbalová, H., Uhlířová, K., Kléma, J., Machala, M., Šrám, R., Ciganek, M., Topinka, J. 2012 Global Gene Expression Changes in Human Embryonic Lung Fibroblasts Induced by Organic Extracts From Respirable Air Particles, detail

Krejník, M., Kléma, J. 2012 Empirical Evidence of the Applicability of Functional Clustering through Gene Expression Classification, detail

Holec, M., Kléma, J., Železný, F., Tolar, J. 2012 Comparative Evaluation of Set-level Techniques in Predictive Classification of Gene Expression Samples, detail

Kléma, J. 2012 Machine Learning Applications in Bioinformatics, detail

Girmanova, E., Brabcová, I., Kléma, J., Hřibová, P., Wohlfartova, M., Skibova, J., Viklický, O. 2012 Molecular Networks Involved in the Immune Control of BK Polyomavirus, detail

Kléma, J. 2012 Learning from Heterogeneous Genomic Data, detail

Vítovec, P., Kléma, J. 2011 Gene Interaction Extraction from Biomedical Texts by Sentence Skeletonization, detail

Líbalová, H., Uhlířová, K., Kléma, J., Machala, M., Šrám, R., Topinka, J. 2011 Globální změny genové exprese v lidských embryonálních plicních fibroblastech indukované organickými extrakty prachových částic z ovzduší, detail

Topinka, J., Líbalová, H., Hanzalová, K., Kléma, J., Sram, R.J. 2011 Deregulated Genes and Pathways in Human Embryonic Lung Fibroblasts (HEL 12469) treated with Complex Mixtures of the Air Pollutants, detail

Vítovec, P., Kléma, J. 2011 Gene Interaction Extraction from Biomedical Texts by Sentence Skeletonization, detail

Kléma, J., Holec, M., Železný, F., Tolar, J. 2011 Comparative Evaluation of Set-Level Techniques in Microarray Classification, detail

Hrdlička, J., Kléma, J. 2011 Schizophrenia Prediction with the Adaboost Algorithm, detail

Vítovec, P., Kléma, J. 2011 Sequential Patterns for Extracting Protein-protein Interactions From Biomedical Texts, detail

Holec, M., Železný, F., Kléma, J., Tolar, J. 2010 A Comparative Evaluation of Gene Set Analysis Techniques in Predictive Classification of Expression Samples, detail

Holec, M., Železný, F., Kléma, J., Tolar, J. 2010 Comparative Evaluation of Set Level Techniques in Predictive Classification of Gene Expression Samples, detail

Holec, M., Železný, F., Kléma, J., Tolar, J. 2010 Towards Set Level Predictive Classification of Gene Expression Data, detail

Cremilleux, B., Soulet, A., Kléma, J., Celine, H., Gandrillion, O. 2009 Discovering Knowledge from Local Patterns in SAGE Data, detail

Kléma, J., Železný, F., Trajkovski, I., Karel, F., Cremilleux, B., Tolar, J. 2009 Gene Expression Mining Guided by Background Knowledge, detail

Krejník, M., Kléma, J. 2009 Knowledge-Based Feature Extraction in Genomics, detail

Karel, F. 2009 Quantitative Association Rules Mining, detail

Holec, M., Železný, F., Kléma, J., Tolar, J. 2009 Integrating Multiple Platform Expression Data through Gene Set Features, detail

Plantevit, M., Charnois, T., Kléma, J., Rigotti, Ch., Cremilleux, B. 2009 Combining Sequence and Itemset Mining to Discover Named Entities in Biomedical Texts: A New Type of Pattern, detail

Holec, M., Kléma, J., Železný, F., Bělohradský, J., Tolar, J. 2009 Cross-Genome Knowledge-Based Expression Data Fusion, detail

Holec, M., Železný, F., Kléma, J., Svoboda, J., Tolar, J. 2008 Using Bio-Pathways in Relational Learning, detail

Železný, F., Kléma, J., Holec, M., Bělohradský, J. 2008 XGENE.ORG: Cross-GENomE Cross-ORGanism expression data analysis, detail

Kléma, J., Holas, T., Železný, F., Karel, F. 2008 Dolování silných vzorů z lékařských sekvenčních dat, detail

Kléma, J., Nováková, L., Karel, F., Štěpánková, O., Železný, F. 2008 Sequential Data Mining: A Comparative Case Study in Development of Atherosclerosis Risk Factors, detail

Kléma, J., Šilhavá, J., Smrž, P., Železný, F. 2008 Gene Expression Data Mining Guided by Genomic Background Knowledge, detail

Kléma, J., Blachon, S., Soulet, A., Cremilleux, B., Gandrillon, O. 2008 Constraint-based knowledge discovery from SAGE data, detail

Mareš, J., Szakácsová, M., Železný, F., Kléma, J., Soukup, V., Dušková, J., Babjuk, M. 2007 Differences in Gene Expression between Transitional Cell Carcinoma of The Human Bladder with Short and Prolonged Recurrence Free Period Using Oligonucleotide Micorarrays, detail

Karel, F., Kléma, J. 2007 Quantitative Association Rule Mining in Genomics, detail

Stryczek, K., Horáček, P., Kléma, J., Castells, X., Stewart, B., Geoffroy, J.-M. 2007 Capitalizing on Aggregate Data for Gaining Process Understanding--Effect of Raw Material, Environmental and Process Conditions on the Dissolution Rate of a Sustained Release Product, detail

Soulet, A., Kléma, J., Cremilleux, B. 2007 Efficient Mining Under Rich Constraints Derived from Various Datasets, detail

Kléma, J., Soulet, A., Cremilleux, B., Blachon, S., Gandrilon, O. 2006 Mining Plausible Patterns from Genomic Data, detail

Charnois, T., Durand, N., Kléma, J. 2006 Automated Information Extraction from Gene Summaries, detail

Soulet, A., Kléma, J., Cremilleux, B. 2006 Efficient Mining under Flexible Constraints through Several Datasets, detail

Kléma, J., Almonayyes, A. 2006 Classification of Fanatic Texts Using Random Forests, detail

Karel, F., Kléma, J. 2006 Adaptivity in e-learning, detail

Kléma, J., Almonayyes, A. 2006 Automatic categorization of fanatic texts using random forests, detail

Kléma, J., Holas, T., Železný, F., Karel, F. 2005 Mining the Strongest Patterns in Medical Sequential Data, detail

Kléma, J. 2005 Mining Patterns In Medical Sequential Data, detail

Kléma, J., Kubalík, J., Lhotská, L. 2005 Optimized Model Tuning in Medical Systems, detail

Karel, F., Kléma, J. 2005 Dolování ordinálních asociačních pravidel, detail

Kubalík, J., Pošík, P., Lhotská, L., Kléma, J. 2005 Applications of Genetic Algorithms, detail

Nováková, L., Kléma, J., Štěpánková, O. 2005 Získávání znalostí z longitudinálních studií, detail

Kout, J., Vlček, T., Kléma, J. 2005 Predictive System for Multivariate Time Series, detail

Nováková, L., Kléma, J., Štěpánková, O. 2004 Anachronické atributy a dobývání znalostí, detail

Kléma, J., Kout, J., Vejmelka, M. 2004 Predictive System for Multivariate Time Series, detail

Kout, J., Kléma, J. 2004 Predikční systém pro distribuční společnosti, detail

Kubalík, J., Kléma, J., Kulich, M. 2004 Application of Soft Computing Techniques to Rescue Operation Planning, detail

Hyánková-Svobodová, J., Kléma, J., Hačkajlo, D. 2004 Dvouleté sledování pacientů po kardiochirurgických výkonech, detail

Nováková, L., Kléma, J., Štěpánková, O. 2004 Anachronistic attributes and data mining, detail

Kléma, J., Flek, O., Kout, J., Nováková, L. 2004 Intelligent Diagnosis and Learning in Centrifugal Pumps, detail

Kléma, J., Nováková, L., Karel, F., Štěpánková, O. 2004 Trend Analysis in Stulong Data, detail

Kout, J., Hejný, T., Kléma, J. 2004 Inteligentní rozhodování a řízení v distribučních sítích, detail

Nováková, L., Kléma, J., Štěpánková, O. 2004 Anachronistic Attributes in Temporal Data: A Case Study, detail

Kulich, M., Faigl, J., Kléma, J., Kubalík, J. 2004 Rescue Operation Planning by Soft Computing Techniques, detail

Nováková, L., Kléma, J., Jakob, M., Štěpánková, O., Rawles, S. 2003 Trend analysis and risk identification, detail

Štěpánková, O., Kléma, J., Mikšovský, P. 2003 Collaborative Data Mining with Ramsys and SumatraTT: Prediction of Resources for a Health Farm, detail

Lhotská, L., Kubalík, J., Kléma, J., Palouš, J., Kokol, P. 2003 Intelligent Medical Data Analysis, detail

Kléma, J., Železný, F. 2003 Data-Mining and Decision-Support Systems Integration, detail

Kléma, J., Štěpánková, O., Nováková, L. 2003 Predictive Medical Data Mining: Case Study, detail

Železný, F., Kléma, J., Štěpánková, O. 2003 Strojové učení v dobývání znalostí, detail

Štěpánková, O., Kléma, J., Železný, F. 2003 Rozpoznávání zajímavých souvislostí v datech, detail

Kléma, J. 2002 Prototype Applications of Instance-Based Reasoning, detail

Enevoldsen, L., Kout, J., Kléma, J. 2002 Cooporation between Industry and Universities: Examples and Experience, detail

Kléma, J. 2002 Machine Learning in Diagnostics and Time Series Prediction, detail

Štěpánková, O., Lauryn, Š., Aubrecht, P., Kléma, J., Mikšovský, P., Nováková, L., Palouš, J. 2002 Data Mining for Resource Allocation: A Case Study, detail

Kléma, J., Kubalík, J., Palouš, J. 2002 Optimized Model Tuning in Medical Systems, detail

Štěpánková, O., Kléma, J., Mikšovský, P. 2002 Collaborative Data Mining and Data Exchange: A Case Study, detail

Štěpánková, O., Kléma, J., Lauryn, Š., Mikšovský, P., Nováková, L. 2002 Data Mining for Resource Allocation:A Case Study, detail

Kout, J., Kléma, J., Ertl, O. 2001 On Improving of Robust Valve Openness Control II, detail

Kout, J., Kléma, J., Ertl, O. 2001 Extraction of Heating System Parameters, detail

Kout, J., Kléma, J., Ertl, O. 2001 From Pump Measurable Variables to Average Valve Openness-Minimal System, detail

Kout, J., Kléma, J., Ertl, O. 2001 From Minimal System to Iterative Approach, detail

Šorf, M., Kubalík, J., Fejtová, M., Janků, L., Kléma, J. 2001 Biological Data Processing Using Artificial Intelligence Methods, detail

Kout, J., Kléma, J., Mařík, V. 2001 Intelligent Pump Diagnostics and Control-Project Summary, detail

Šorf, M., Kubalík, J., Janků, L., Fejtová, M., Kléma, J. 2001 Zpracování biologických dat metodami umělé inteligence, detail

Kléma, J., Palouš, J. 2001 Případové usuzování a rozhodování, detail

Kléma, J. 2001 Využití strojového učení pro predikci mortality, detail

Sprogar, M., Kokol, P., Zorman, M., Podgorelec, V., Lhotská, L., Kléma, J. 2001 Notes on Medical Decision Model Creation, detail

Kléma, J., Palouš, J. 2001 iBARET - Instance-Based Reasoning Tool, detail

Sprogar, M., Kokol, P., Zorman, M., Podgorelec, V., Lhotská, L., Kléma, J. 2001 Second Opinion Decision Tress, detail

Sprogar, M., Kokol, P., Zorman, M., Podgorelec, V., Lhotská, L., Kléma, J. 2001 Second Opinion Decision Trees, detail

Kléma, J., Palouš, J. 2001 Sharing Models in Instance-Based Reasoning, detail

Kout, J., Kléma, J., Mařík, V. 2001 Intelligent Pump Diagnostics and Control, detail

Kout, J., Kléma, J., Ertl, O., Mařík, V. 2001 Heating Pump Control by Means of Valve Openness Prediction, detail

Kout, J., Kléma, J., Ertl, O. 2001 On Improving of Robust Valve Openness Control, detail

Kléma, J. 2000 Instance-Based Reasoning for Mortality Prediction, detail

Kléma, J., Štěpánková, O., Palouš, J., Veljmelka, M. 2000 Využití strojového učení pro predikci mortality na Sloučeným registrem srdečních operací střediska MEDICON, detail

Palouš, J., Kléma, J. 2000 IBARET-Instance-Based Reasoning Tool, detail

Kléma, J., Mikšovský, P. 2000 Predikce spotřeby plynu a vody, detail

Kout, J., Kléma, J., Štěpánková, O. 2000 Fault Diagnostics of Intelligent Pump, detail

Kléma, J., Lhotská, L., Štěpánková, O., Palouš, J. 2000 Instance-Based Modelling in Medical Systems, detail

Kléma, J., Palouš, J. 2000 Modelování v systémech případového usuzování (pro lékařské aplikace), detail

Kout, J., Kléma, J. 2000 Intelligent Pump Diagnostics and Control, detail

Kléma, J. 2000 Data Mining Algorithms and their Application in PATS, detail

Kléma, J., Kout, J. 1999 Prediction of Gas Consumption, detail

Kléma, J. 1999 Case-Based Reasoning in Health Data Analysis, detail

Štěpánková, O., Mikšovský, P., Pěchouček, M., Matoušek, K., Kléma, J. 1999 Inductive Logic Programming as a Tool for Knowledge Extraction, detail

Kléma, J., Štěpánková, O., Vejmelka, M. 1999 PreDO: Data Generator of Precisely Defined Objects for Machine, detail

Lhotská, L., Kléma, J. 1999 Utilization of Machine Learning Methods in Multi-agent Systems, detail

Lhotská, L., Kléma, J., Štěpánková, O. 1998 Problems of Learning in Multi-Agent Systems, detail

Jiřina, M. 1998 Initial Setting of Weights in the Kohonen Maps, detail

Kléma, J., Kout, J., Mařík, V., Štěpánková, O. 1998 Gas Take-off Analysis, detail

Kléma, J., Kout, J. 1998 Predikce spotřeby plynu, detail

Kléma, J., Kout, J. 1998 Predikce spotřeby plynu, detail

Kléma, J., Mikšovský, P., Štěpánková, O. 1998 Predictive Model of Heart Operation Result-Built on Merged National Registry on Cardiovascular Interventions of MEDICON Center, detail

Kléma, J., Kout, J., Štěpánková, O., Flek, O., Unsworth, P., Vetcha, S. 1998 Fault Diagnostics of Intelligent Pump, detail

Kléma, J. 1998 Chybová diagnostika pomocí metod strojového učení.Případová studie:chybová diagnostika čerpadla, detail

Kléma, J., Kubalík, J., Lauryn, Š. 1997 Background Knowledge in Machine Learning Methods, detail

Kout, J., Kléma, J., Lauryn, Š., Štěpánková, O., Mařík, V. 1997 AI Methods for Intelligent Pump Diagnostics II, detail

Kléma, J., Kout, J., Štěpánková, O., Mařík, V. 1997 Gas Take-off Analysis, detail

Kléma, J., Kout, J., Štěpánková, O. 1997 Intelligent Pump Diagnostics by Means of Attribute Space Transformation, detail

Hetmerová, A., Kléma, J., Štěpánková, O. 1997 A Toolbox for Generation of Decision Trees from Data, detail

Kléma, J., Kout, J., Lauryn, Š. 1997 AI Methods for Intelligent Pump Diagnostics, detail

Lhotská, L., Vlček, T., Kouba, Z., Přeučil, L., Lažanský, J., Štěpánková, O., Mařík, V., Kléma, J., Hazdra, T. 1996 A Multi-Agent System in Transport Management, detail

Kléma, J. 1996 Use of Machine Learning Algorithms in Distributed Environment Discim, detail

Kléma, J. 1996 Use of Machine Learning Algorithms in Distributed Environment, detail

Lhotská, L., Vlček, T., Kouba, Z., Přeučil, L., Lažanský, J., Štěpánková, O., Mařík, V., Kléma, J., Hazdra, T. 1996 A Multi-Agent System in Transport Management, detail

Rozinek, J. 1996 Predikce časových řad neuronovými sítěmi, detail

Kléma, J., Lhotská, L., Štěpánková, O. 1995 Knowledge Acquisition for Natural Language Processing, detail

Kléma, J., Lhotská, L. 1995 Machine Learning, Applications in Natural Language Processing, detail

Kléma, J. 1995 Machine Learning, Applications in Modelling of Dynamic, detail

Kléma, J. 1995 Příklady použití metody PC-GUHA, detail